Reference Library

Sequencing References
1) Feng, Q., et. al., (2002) "Sequence and analysis of rice chromosome 4" Nature v420, pp316-319
2) Bhattacharyya, A., et. al., (2002) “Draft Sequencing and Comparative Genomics of Xylella fashdiosa Strains Reveal Novel Biological Insights”. Genome Research, v12(10), pp1556-63.
3) Yu, J., et. al., (2002) "A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)".Science v296, pp79-92.
4) Vatcher, G., et. al., (2002) “Resuspension of DNA Sequencing Reaction Products in Agarose Increases Sequence Quality on an Automated Sequencer”. Biotechniques v33, pp532-38.
5) Lau, W. W., et. al., (2002) “Genetic Diversity of Attached Bacteria in the Hindgut of the Deposit Feeding Shrimp Neotrypaea (formerly Callianassa) californiensis (Decapoda: Thalassinidae)”. Microb. Ecol. v43(4), pp455-66.
6) Nelson, J. R., et. al., (2002) “TempliPhi, phi29 DNA Polymerase Based Rolling Circle Amplification of Templates for DNA Sequencing”. Biotechniques v32, ppS44-S47.
7) Dean, F. B., et. al., (2001) "Rapid Amplification of Plasmid and Phage DNA Using Phi 29 DNA Polymerase and Multiply-Primed Rolling Circle Amplification". Genome Research v11(6), pp1095-9.
8) Armbrust, V. E., and Galindo, H., (2001) "Rapid Evolution of a Sexual Reproduction Gene in Centric Diatoms of the Genus Thalassiosira". Appl. Environ. Microbiol. v67(8), pp3501-13.
9) Silva Jr., W. A., et. al. (2001) “PCR Template Preparation for Capillary DNA Sequencing” Biotechniques v30(3) 537-593

STR (Microsatellite) Genotyping References
1) Berti, L., et. al., (2000) “Energy Transfer Cassette Labeling for Capillary Array Electrophoresis Short Tandem Repeat DNA Fragment Sizing”. Bioconjug. Chem. v12(4), pp493-500.
2) Mansfield, E., et. al., (1998) "Analysis of Multiplexed Short Tandem Repeat (STR) Systems Using Capillary Array Electrophoresis". Electrophoresis v19(1), pp101-7.
3) Mansfield, E., et. al., (1997) "Rapid Sizing of Polymorphic Microsatellite Markers by Capillary Array Electrophoresis". J. Chromatogr. A. v781(1-2), pp295-305.
4) Vainer, M., et. al., (1997) "Short Tandem Repeat Typing by Capillary Array Electrophoresis: Comparison of Sizing Accuracy and Precision Using Different Buffer Systems". Genomics v41(1), pp1-9.
5) Mansfield, E., et. al., (1996) "Sensitivity, Reproducibility and Accuracy in Short Tandem Repeat Genotyping Using Capillary Array Electrophoresis". Genome Research v6(9), pp893-903.

SNuPE References
1) Loukola, A., et. al., (in preparation) "Comprehensive evaluation of the association between prostate cancer and genotypes/haplotypes in CYP17, CYP3A4, SRD5A2, and the Androgen Receptor".
2)Plummer, S. J., et. al., (submitted) "CYP3A4 and CYP3A5 genotypes, haplotypes and risk of prostate cancer". Cancer Epi Biomarkers and Prevention
3) Dains, K. M. (2003) "A review of single base extension (SBE) for SNP genotyping". J. Clin. Ligand Assay in press.

Other Applications
1) Kristensen, A. T., et. al., (2002) "Detection of mutations in Exon 8 of TP53 by Temperature Gradient 96-Capillary Array Electrophoresis". Biotechniques v33(3), pp650-3.